Identifying synergistically switching pathways for multi-product strain improvement using multiobjective flux balance analysis
نویسندگان
چکیده
The current work involves in silico analysis of metabolic network of E. coli, characterizing its pathways for the production of various industrially important metabolites including pyruvate, acetate, lactate, ethanol and various amino acids. Initially, the correlation among the flux distribution profiles for each objective has been investigated by resorting to a novel multiobjective optimization. Subsequently, we identified the genes which are significant for switching the metabolic pathways from one objective to another. Thus, the present analysis allows us to explore synergism among the metabolic pathways for different combinations of multi-products, providing a new insight into the behavior of the biological system.
منابع مشابه
Multi-product Trade-off Analysis of E. coli by Multiobjective Flux Balance Analysis
In this study, we developed a novel multiobjective linear programming (MOLP) strategy based on the noninferior set estimation (NISE) method (Solanki et al., 1993), whereby Pareto solutions for the given set of conflicting objectives and corresponding flux distribution profiles are generated to understand how the internal fluxes are changed in the metabolic system. Furthermore, this MOLP approac...
متن کاملSoft constraints-based multiobjective framework for flux balance analysis.
The current state of the art for linear optimization in Flux Balance Analysis has been limited to single objective functions. Since mammalian systems perform various functions, a multiobjective approach is needed when seeking optimal flux distributions in these systems. In most of the available multiobjective optimization methods, there is a lack of understanding of when to use a particular obj...
متن کاملMulti-level Thrust Ripples Minimization of Linear Flux Switching Motors With Segmented Secondary by Combined Genetic Algorithm and Response Surface Methodology
Linear flux switching motors with simple passive segmented secondary, referred as Segmented Secondary Linear Flux Switching Motors (SSLFSMs), have low cost secondary and therefore are applicable to transportation systems like Maglev. However, it is shown that the SSLFSMs suffer from high thrust ripples. In this paper, minimizing SSLFSM thrust ripples besides maximizing its developed thrust are ...
متن کاملModeling the Optimal Central carbon metabolic pathways under Feedback Inhibition using flux Balance Analysis
Metabolism is a complex process for energy production for cellular activity. It consists of a cascade of reactions that form a highly branched network in which the product of one reaction is the reactant of the next reaction. Metabolic pathways efficiently produce maximal amount of biomass while maintaining a steady-state behavior. The steady-state activity of such biochemical pathways necessar...
متن کاملA nonlinear multi objective model for the product portfolio optimization: An integer programming
Optimization of the product portfolio has been recognized as a critical problem in industry, management, economy and so on. It aims at the selection of an optimal mix of the products to offer in the target market. As a probability function, reliability is an essential objective of the problem which linear models often fail to evaluate it. Here, we develop a multiobjective integer nonlinear cons...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
عنوان ژورنال:
دوره شماره
صفحات -
تاریخ انتشار 2007